Computational Genomics: Applied Comparative Genomics
...regulation, personal genome analysis, and cancer genomics. The grading will be based on assignments, a midterm exam, class presentations, and a significant class project. There are no f...2352 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blas...2350 days ago
funannotate: Eukaryotic Genome Annotation Pipeline
...ftware package was to be able to accurately and easily annotate a genome for submission to NCBI GenBank. Existing tools (such as Maker) require significant manually editing to comply wi...2058 days ago
Versatile genome assembly evaluation with QUAST-LG
...usual and do not forget to add ‐‐large option to your command! A short list of the new features (see CHANGES for all): Significant speedup achieved by both ...1965 days ago
Hawkeye: an interactive visual analytics tool for genome assemblies
Genome sequencing remains an inexact science, and genome sequences can contain significant errors if they are not carefully examined. Hawkeye is our new visual analytics tool for genome...1954 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...alculate posterior probabilities. Assessed using the popular benchmarks: BAliBASE, PREFAB, SABmark and OXBENCH, MSAProbs achieves statistically significant accuracy improvements over th...1765 days ago
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