Results for "single cell sequencing"
Bio-Scripts
#!/usr/bin/env perl # Usage: fastaRead.pl data.fa use strict; use warnings; my $filename = $ARGV[0]; my $sequence; open my $fileH, "2934 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-Wu...2926 days ago
- #USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE...a t distribution #USAGE: CI_normal(matrix[,x],97.5) - sing...ormal distribution #USAGE: CI_tdist(matrix[,x],97.5) - single col...
2892 days ago
- ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250G --...nds completed successfully. :-) ** Harvesting all assembled transcripts into a single mul...
2147 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fa...filename(s) and deflines (only for sing...become joined into single str...
2146 days ago
- ...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g. ad...Miscellaneous tools, e.g. those that aid in...ation in each tile in the flowcell. PrintReads...
2095 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ----------------------------------------------------...4.5.5 R/3.2.3-goolf-1.4.10 gromacs/single/4.5...2054 days ago
- #http://www.nupack.org/downloads/source ➜ tools git:(master) ✗ cd nupack3.0.6...: GetEnergy.c:304:7: warning: variable ‘leftSingle’ set but not used [-Wunused-but-set-variable] int leftSing...c/design/design_pfunc_utils' make -C design/single-com...
2047 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ form...p is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1579 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to d...s/(.)\1/$1/gi #And finally, if you wanted to trim any number of duplicates down to a single let...1571 days ago
