Results for "single molecule sequencing"
Bio-Scripts
#!/usr/bin/env perl # Usage: fastaRead.pl data.fa use strict; use warnings; my $filename = $ARGV[0]; my $sequence; open my $fileH, "2914 days ago
- #USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE...a t distribution #USAGE: CI_normal(matrix[,x],97.5) - single c...ormal distribution #USAGE: CI_tdist(matrix[,x],97.5) - single col...
2871 days ago
- ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250G --lef...ds completed successfully. :-) ** Harvesting all assembled transcripts into a single mul...
2127 days ago
- ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fa...filename(s) and deflines (only for single...become joined into single str...
2126 days ago
- ...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g. ad...CRAM file to locate duplicate molecules. MarkDuplicatesSpark...ed allele fractions in pooled sequencing CalculateGenotypePosteri...
2075 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail -------------------------------------------------------....5.5 R/3.2.3-goolf-1.4.10 gromacs/single/4.5...2034 days ago
- #http://www.nupack.org/downloads/source ➜ tools git:(master) ✗ cd nupack3.0.6...: GetEnergy.c:304:7: warning: variable ‘leftSingle’ set but not used [-Wunused-but-set-variable] int leftSingle;...c/design/design_pfunc_utils' make -C design/single-com...
2026 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ format)...is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1559 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to dele.../(.)\1/$1/gi #And finally, if you wanted to trim any number of duplicates down to a single let...1550 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # Th...1542 days ago
