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• • Rahul Agarwal@raag

  

  Single cell sequencing:http://www.wired.com/wiredscience/2013/07/bringing-microbial-dark-matter-into-the-light/ #Omics

  3954 days ago

• • Rahul Nayak@rahul

  

  perl -nle '$count += () = /XY[0-9]+/g; END {print $count}' inputfile #Count #Perl #Perloneliner

  3656 days ago

• • Aaryan Lokwani@aaryan

  

  Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

  2154 days ago

• • Martin Jones@martin

  

  “The greatest single achievement of nature to date was surely the invention of the molecule DNA.” ― Lewis Thomas

  3565 days ago

• • Jit@jit.aber

  

  Multi fasta to single fasta files $ perl -ne 'if (/^>(\S+)/) { close OUT; open OUT, ">$1.fasta" } print OUT' genome.fasta #Multi-fasta #fasta #multi #genome #files

  1148 days ago

• • Neelam Jha@neelam

  

  PAired-eND Assembler for DNA sequences https://github.com/neufeld/pandaseq #Sequence #Assembler #PANDAseq

  2961 days ago

• • Jit@jit.aber

  

  The #bacterial #DnaA-trio #replication origin element specifies single-stranded DNA initiator #binding http://www.nature.com/nature/journal/vaop/ncurrent/full/nature17962.html

  2897 days ago

• • Shruti Paniwala@shruti

  

  Fasta sequence length: awk '/^>/ {if (seqlen){print seqlen}; print ;seqlen=0;next; } { seqlen += length($0)}END{print seqlen}' file.fa #Length #Linux #OneLiner

  2669 days ago

• • Jit@jit.aber

  

  Add color to vim. Open vi .vimrc and at the end of the file add "syntax on" #Vim #Syntax #Highlight #Vi #Linux

  2625 days ago

• • Jit@jit.aber

  

  To add something to end of all header lines: $ sed 's/>.*/&WHATEVERYOUWANT/' file.fa > outfile.fa #Add #Fasta

  2580 days ago

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