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Results for "single-node"

Bio-Scripts

• • Radha Agarkar@radhaagarkar

  

  Parse a Fasta file with Perl

  #!/usr/bin/env perl # Usage: fastaRead.pl data.fa use strict; use warnings; my $filename = $ARGV[0]; my $sequence; open my $fileH, "

  2927 days ago

• • Jit@jit.aber

  

  Extract sequence from UCSC

  #!/usr/bin/env perl use strict; use warnings; use LWP::Simple; use XML::XPath; use XML::XPath::XMLParser; # Use DAS of UCSC to fetch specific sequence by its gi...

  2923 days ago

• • EagleEye@santhilalsubhash

  

  Calculate confidence interval for multiple columns in a matrix (table) using R function CI_normal and CI_tdist

  #USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE: CI_tdist(matrix[,c(x:y)],97.5) - multiple column from a t distribution #USA...

  2885 days ago

• • Jit@jit.aber

  

  Running Trinity on RNA-seq !

  ➜ trinityrnaseq-Trinity-v2.6.6 git:(master) ✗ ./Trinity --seqType fq --max_memory 250G --left /media/urbe/MyPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBGACXX.IND11_noribo_c...

  2140 days ago

• • Jit@jit.aber

  

  Fastq-dump for SRA download

  ➜ bin git:(master) ✗ ./fastq-dump --help Usage: ./fastq-dump [options] [...] ./fastq-dump [options] INPUT -A|--accession Replaces accession deriv...

  2139 days ago

• • Jit@jit.aber

  

  Downloading GATK !

  jitendra@jitendra-UNLOCK-INSTALL[SNP] wget https://github.com/broadinstitute/gatk/releases/download/4.0.2.1/gatk-4.0.2.1.zip --2018-08-30 11:47:20-- https://github.com/...

  2088 days ago

• • Jit@jit.aber

  

  Update zsh on Ubuntu !

  ➜ upgrade_oh_my_zsh Updating Oh My Zsh remote: Counting objects: 484, done. remote: Compressing objects: 100% (243/243), done. remote: Total 484 (delta 290), reused 3...

  2088 days ago

• • Jit@jit.aber

  

  Installing pb-assembly on Linux !

  [jnarayan@hmem00 ~]$ module avail -------------------------------------------------------- /usr/share/Modules/modulefiles --------------------------------------------...

  2047 days ago

• • Jit@jit.aber

  

  Installing nupack3.0.6

  #http://www.nupack.org/downloads/source ➜ tools git:(master) ✗ cd nupack3.0.6 ➜ nupack3.0.6 git:(master) ✗ make make -C src/ make[1]: Entering directory '/home/urbe...

  2039 days ago

• • Rahul Nayak@rahul

  

  Install NPM !

  $ sudo apt install npm Reading package lists... Done Building dependency tree Reading state information... Done The following additional packages will be insta...

  1566 days ago

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