HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and...ent files Visualizing data in a genome browser RNA-Seq De novo transcript discove...tering of large expression datasets (microarray or RNA-Seq) Microarray Basic analy...2931 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is ba...veral HSV values (only value varies). The method can perform both in small-...2930 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard s...2929 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most of the heuris...2925 days ago
2914 days ago
2906 days ago
2892 days ago
2165 days ago
2873 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Pr...g researchers to use faster abundance estimation programs, which only classify small s...2868 days ago