Results for "small RNA-Seq"
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Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assem...ous contigs, or when they run out, single copy contigs, and ii) the small_contig_inserter, which inserts the small c...2853 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural...etter results.To run discovery or genotyping on a single sequenced genome or a small s...
2798 days ago
- KisSplice is a software that enables to analyse RNA-seq data with or without a reference genome. It is an exact local transcriptome assembler that allows to identify SNPs, indels and alternati...
2819 days ago
- Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo&n...of contiguous sequence (contigs) arranged in thousands of scaffolds instead of small n...
2811 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic...select strongly conserved motif cores, which we extended and collapsed into a small n...2733 days ago
- Gene finding in eukaryotic genomes is notoriously diffic...ark-ET is a gene prediction tool that incorporates RNA-Seq data into unsupervised traini...ires supervised training and uses information from RNA-Seq reads in the prediction step....
1951 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as in... less fragmented and with total size smaller than the input contigs...-optimised, so it can be run even on the laptop for small-t...
2803 days ago
- R-chie allows you to make arc diagrams of RNA secondary structures, allowing for easy comparison and overlap of two structures, rank and display basepairs in colou...
2803 days ago
- Murasaki is an anchor alignment program that is exteremely fast (17 CPU hours for whole Human x Mouse genome (with 40 nodes: 35 wall minutes), or 8 mammals in 21 CPU...
2774 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression using short-read deep sequencing d...
2769 days ago
