Next generation sequencing in R or bioconductor environment
...le formats (such as GFF). See the Small RNA Profiling exercise for an...visualizing ChIP-Seq data. Only a small selection of these packages i...eline SPP Tutorial MACS SIPeS RNA-Seq Analysis Counting Reads that...ges are available for normalizing RNA-Seq read count data and identifyi...3617 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo...sis. Streamlined analysis workflows for: ChIP-Seq, RNA-Seq, DNA-Seq, DNA Methylation, Ge...apping and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie, BLAT and EL...3511 days ago
3488 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing fi...d learning purposes. Visualize whole human genome sequencing data including small v...3534 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de no...apping and Quantifying Mammalian Transcriptomes by RNA-Seq. Supports Bowtie, BLAT and EL...* G-Mo.R-Se - G-Mo.R-Se is a method aimed at using RNA-Seq short reads to build de novo...3235 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nt tools including alignment, RNA-Seq, DNA-Seq, ChIP-Seq, Small RNA-Seq, Genome Browser, visualizat...2) Applications for RNA-Seq, Small RNA-Seq, WGS/WES, Pathway enric...iction, copy number analysis, small sample DNA-Seq workflows, large...Description: detects SNPs and small indels from diploid sample; des...2901 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular ar...ividual laboratories. The U.S. Small Business Administration: The U.S. Small Business Administration offer...of Medicine: From tech to small businesses, the USNLM’s...ludes a database "customized to smaller...2930 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociati...2203 days ago
2861 days ago
Genome Assembly Tools and Software - PART1 !!
...assemblies, generating a much smaller set of nonredundant contigs....rgeted gene assembly for both RNA-Seq and metagenomic data. It addr...s of which the insert size is smaller than the sum of the two read...tome assembler that assembles RNA-seq reads into transcripts. SSP a...2678 days ago