Results for "somatic"
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...cuss and outline the process of calling familial related mutations. Somatic Variant Calling In this protocol we discuss and outline the process of identifying somatic variants or mutations. Asse...3653 days ago
- Development of cancer is driven by somatic alterations, including numerical and structural chromosomal aberrations. Currently, several computational methods are available and are wide...
2154 days ago
- ...n an efficient manner either from TCGA sources or any in-house studies as long as the data is in MAF format. Maftools can also handle ICGC Simple Somatic Mutation format. maftools is...
2635 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...he specification of custom UMI protocols. “For liquid biopsies and low-grade FFPE samples, UMI support in DNA-Seq enables the detection of somatic variants at low concentration...2386 days ago
- ...nts (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sam...
2169 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...erozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN...for targeted short read sequencing data, integrates well with standard somatic variant detection and copy nu...2096 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 s...1570 days ago
maftools : Summarize, Analyze and Visualize MAF Files
...nnotation Format (MAF) is being widely accepted and used to store somatic variants detected. The C...ach cancer type being over 200. Resulting data consisting of somatic variants are stored in the fo...1229 days ago
FiNGS: Filters for Next Generation Sequencing
...e and their thresholds) Option to use filters identical to ICGC recommendations FiNGS provides researchers with a tool to reproducibly filter somatic variants that is simple to bo...1163 days ago
- ...ion Annotation Format (MAF) is being widely accepted and used to store somatic variants detected. The Cancer...size of each cancer type being over 200. Resulting data consisting of somatic variants are stored in the fo...
870 days ago
