3666 days ago
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Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...he specification of custom UMI protocols. “For liquid biopsies and low-grade FFPE samples, UMI support in DNA-Seq enables the detection of somatic variants at low concentration...2400 days ago
2182 days ago
PureCN: copy number calling and SNV classification using targeted short read sequencing
...erozygosity (LOH), and classifies single nucleotide variants (SNVs) by somatic status and clonality. PureCN...for targeted short read sequencing data, integrates well with standard somatic variant detection and copy nu...2109 days ago
ClinCNV: Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data
ClinCNV detects CNVs in germline and somatic context in NGS data (targeted and whole-genome). We work in cohorts, so it makes sense to try ClinCNV if you have more than 10 s...1584 days ago
maftools : Summarize, Analyze and Visualize MAF Files
...nnotation Format (MAF) is being widely accepted and used to store somatic variants detected. The C...ach cancer type being over 200. Resulting data consisting of somatic variants are stored in the fo...1242 days ago
FiNGS: Filters for Next Generation Sequencing
...e and their thresholds) Option to use filters identical to ICGC recommendations FiNGS provides researchers with a tool to reproducibly filter somatic variants that is simple to bo...1177 days ago
883 days ago