EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1229 days ago
AutoDock Vina: an open-source program for doing molecular docking.
AutoDock Vina is an open-source program for doing molecular docking. It was designed and implemented by Dr. Oleg Trott in the Molecular Graphics Lab at The Scripps R...1425 days ago
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CISA: Contig Integrator for Sequence Assembly
...d assemblies merged by existing tools. This tool is implemented in Python and requires MUMmer and BLAST+ to be installed on the local machine. The source code of CISA and examples of...2701 days ago
E-MEM: Efficient computation of Maximal Exact Matches
...program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source code can be downloaded h...2701 days ago
GARM:Genome Assembly, Reconciliation and Merging
The pipeline is based mainly implemented using Perl scripts and modules and third-party open source software like the AMOS (Myers et al., 2000) and MUMmer (Kurtz et al., 2004) package...2697 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...uences. It does not need to be supplied with any knowledge of the organism, as it learns all the properties it needs to on its own. Open Source: Prodigal source code is freely available unde...2687 days ago
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