Results for "splice"
Blogs
Live Webinar on RNA-Seq Data Analysis on 9 Nov 2016
...h Statistical approach and Splicing events detection. Strand NGS also supports novel discovery like identification of novel genes, exons and Novel splice junctions, alongside it can a...2761 days ago
Bioinformatics tools for telomere to telomere assembly !
...Wenger)● JumboDB – tool for de Bruijn graph construction (Anton Bankevich @AntonBankevich)● uLTRA – tool for splice alignment of long transcripto...998 days ago
Bookmarks
- ....nih.gov/pubmed/26109056), and recursive clipping of mismatches near the edges of the reads, which avoids accumulating artefactual mismatches near splice sites and is needed to distin...
2328 days ago
minimap2: A versatile pairwise aligner for genomic and spliced nucleotide sequences
...nomic reads ./minimap2 -ax sr ref.fa read1.fa read2.fa > aln.sam # short genomic paired-end reads ./minimap2 -ax splice ref.fa rna-reads.fa > aln.sam # spliced long reads ./minimap2 -ax s...2152 days ago
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Top-level pages
- ...ain one continuous sequence; find the tranlation and transcription initiation sites, find promoter sites, define open reading frames (ORF); find splice sites, introns, exons; trans...
3953 days ago
- ...;HMM A fast and accurate gene finder based on a GHMM architecture, developed specifically for eukaryotes. It incorporates splice site models adapted from the GeneSplicer program and uses interpolate...
3948 days ago
- +4 more Top-level pages
ResearchLabs posts
- ...d protein models, investigation of protein energy landscapes, detection of RNA sequence/structure motifs, prediction and evaluation of alternative splice forms, description and detect...
3946 days ago
- Research in our group focuses on the investigation of the signals involved in gene specification in genomic sequences (promoter elements, splice sites, translation initiation sites, e...
3540 days ago
Tags
- ChopStitch is a new method for finding putative exons and constructing splice graphs using an assembled transcriptome and whole genome shotgun sequencing (WGSS) data. ChopStitch identifies exon-exon boundaries in de novo assembled RNA-seq data with the help of a Bloom filter that represents the k...
Tags: ChopStitch, exon, annotation, splice, graph, transcriptome, assembly, whole, genome, sequencing
2139 days ago
HS3D: Homo Sapiens Splice Sites Dataset
HS3D (Homo Sapiens Splice Sites Dataset) is a data set of Homo Sapiens Exon, Intron and Splice regions extracted from GenBank Rel.123. The aim of this data set is to give standardized material to train and to assess the prediction accuracy of computational approaches for gene identification and c...Tags: HS3D, Homo, Sapiens, Splice, Sites, Dataset, Human
1429 days ago
Comments
- GenePattern offers a set of tools to support a wide variety of RNA-seq analyses, including short-read mapping, identification of splice junctions, transcript and isoform detection, qu...
3594 days ago
Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3654 days ago
