Results for "split"
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Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabilistic framewor...1149 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...e about ten minutes. There are several checks you can do after running Reapr (detailed here) but for now we’ll stick to looking at the split output file, called 04.b...1344 days ago
Comment on "Installing Porechop on Ubuntu !"
...4,477 reads had adapters trimmed from their end (6,338,306 bp removed) Splitting reads containing middle adapters1,634,477 / 1,634,477 (100.0%) 1,202 / 1,634,477 reads were split based on middle adapters Out...2113 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...1 -O1,1,1,1 -E1,1,1,1 -w100 -b0 -e0.25 -d0.10 Output options: -r --max-out [INT] Maximum number of output records for a specific split read region. [10] -g --gap-split [INT] Minimum length of gap t...2130 days ago
- perl -e 's&&rob@cowsnet.com.au&&&split/[@.]/&&s&.com.&_&&&print' ;)
2560 days ago
- How about this oneliner ;) perl -ne 'chomp;if( />(.*)/){$head = $1; $i=0; next};@a=split("",$_); foreach(@a){$i++;if($_ eq "N" && $s ==0 ){print "$head\t$i"; $s =1}elsif($s==1 && $_ ne "N"){print "\t$i\n";$s=0}}' infile.fa
2697 days ago
Comment on "Structural variation: the hidden genomic treasure"
...ed next-gen sequencing structural variation caller. GRIDSS calls variants based on alignment-guided positional de Bruijn graph break-end assembly, split read, and read pair evidence....2710 days ago
