Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq dataAf...ders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fa...2378 days ago
2371 days ago
2371 days ago
TULIP - The Uncorrected Long read Itegration Pipeline
#Running TULIP (The Uncorrected Long-read Integration Process), version 0.4 late 2016...ns are likely to follow. Tulipseed takes as input alignments files of long reads to sparse short seeds, and ou...2368 days ago
ONT assembly and Illumina polishing pipeline
This pipeline performs the following steps: Assembly of nanopore reads using Canu. Polish canu contigs usi...2368 days ago
miniasm: very fast OLC-based de novo assembler for noisy long reads
Miniasm is a very fast OLC-based&nb...nbsp;assembler for noisy long reads. It takes all-vs-all read sel...e is similar to the raw input reads. So far miniasm is in early...ishes the assembly, including reads overlapping, in ~10 minutes w...ontigs from raw PacBio or ONT reads without error correction. It...2364 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads. By combining homology predic...RITA is able to achieve very high accuracy on short reads. Unlike other hybrid approach...2364 days ago
Opera: An optimal genome scaffolding program
Opera (Optimal Paired-End Read Assembler) is a sequence a...nbsp;). It uses information from paired-end or long reads to optimally order and orient contigs assembled from shotgun-sequencing reads.An updated version called OPE...2364 days ago
INC-Seq: accurate single molecule reads using nanopore sequencing
INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.2364 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
Monitoring the progress of DNA molecules through a membra...urtowski/nanocorr) specifically for Oxford Nanopore reads, as existing packages were in...o perform a hybrid error correction of the nanopore reads using complementary MiSeq dat...2362 days ago