Results for "split reads"
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List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) d...32.118.212/thorfinn/realSFS/ Single-sample Aligned reads Software for SNP and genotype...p://samtools.sourceforge.net/ Multi-sample Aligned reads Package for manipulation of N...2097 days ago
Parallel Processing with Perl !
...One best way is using perl threads and forks. Knowing how these threads and forks work is very import...s using perl fork than perl threads. One of the oldest way to fo...can do this step 1 : split the dataset equally according...file)You can use unix “split” command for thisfor ex...2080 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades. You ca...we used above: illumina_R1.fastq.gz: the Illumina forward reads illumina_R2.fastq.gz: the Illumina reverse reads Assemble Run Spades: s...825 days ago
- Short Read Simulators With the popularity of next-genera...ular short read simulators are designed to simulate reads mimicking many Illumina, 454...pular long read simulators are designed to simulate reads mimicking the two main TGS te...
584 days ago
Bioinformatics tools for genome assembly !
There are numerous genome assembly tools av...ph-based assembler designed for short reads, widely used for assembling l...enovo: An assembler designed for long reads, particularly suited for PacB...sembler designed to handle noisy long reads from Nanopore sequencing....287 days ago
Mitochondrial genome assembly tools !
Mitochondrial genome assembly tools are specialized software and algorithms designed...: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads MITObim: MITObim is a tool s...243 days ago
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