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Results for "split reads"

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• • Jit@jit.aber

  

  Human genome reads http://www.bcgsc.ca/downloads/btl/ntedit/paper/human/ #human #genome #reads #data

  1895 days ago

• • Abhimanyu Singh@abhimanyu

  

  long #Pacbio sequence reads to #assemble a #bacterial genome, including correcting the assembly with short Illumina reads. http://sepsis-omics.github.io/tutorials/modules/cmdline_assembly/

  1852 days ago

• • Jit@jit.aber

  

  Get the secondary hists reads count from SAM awk '{ print $2 }' out.sam| grep "2048" | wc -l #SAM #BAM #Secondary #Hits

  1835 days ago

• • BioJoker@biojoker

  

  Genome Mapping #OneLiner https://bioinformaticsonline.com/snippets/view/39310/one-liner-for-reads-mapping

  1826 days ago

• • Abhimanyu Singh@abhimanyu

  

  ELECTOR: EvaLuator of Error Correction Tools for lOng Reads https://github.com/kamimrcht/ELECTOR #ELECTOR #Evaluation #Correction #Error #Evaluator

  1793 days ago

• • Jit@jit.aber

  

  Nanopore sequencing and #assembly of a human genome with ultra-long reads https://www.nature.com/articles/nbt.4060

  1777 days ago

• • LEGE@lege

  

  #Estimate the #insert #size with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'

  1621 days ago

• • Neelam Jha@neelam

  

  Multifasta 2 singlefasta cat toy.fasta| awk '{ if (substr($0, 1, 1)==">" {filename=(substr($0,2) ".fa")} print $0 > filename }' #Split #fasta #multifasta

  1620 days ago

• • Jit@jit.aber

  

  #Improving draft #assemblies by iterative mapping and #assembly of short reads to eliminate #gaps https://genomebiology.biomedcentral.com/articles/10.1186/gb-2010-11-4-r41

  1552 days ago

• • Rahul Nayak@rahul

  

  Extract the underscore separated values. $ awk '{split($0,a,"_"); print a[1]"_"a[2]}' aaa.txt | sort | uniq -u > all_ids_sm.txt #awk #bash #underscore #list

  1489 days ago

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