Results for "stand-alone"
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I bet, this website will be your best friend in near future. This helps us to explore the existing open source codes and learn from it. You can find some useful open sou...3910 days ago
Stand-alone programs for Bioinformatician
This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/golde...2899 days ago
- Scarpa is a stand-alone scaffolding tool for NGS data. It can be used together with virtually any genome assembler and any NGS read mapper that supports SAM format. Other fea...
2847 days ago
- Function WiseScaffolder is a stand-alone semi-automatic application for genome scaffolding of pre-assembled contigs using mate-pair data. It also produces editable scaffold maps, allow...
2847 days ago
- ...also show other sequence features like repeat sequence distributions in one whole-genome DNA sequence by comparing the genome to itself.It is a stand-alone graphical user interface (GUI...
2628 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
...s portable across a variety of computer platforms; indeed its name stands for "Local Alignments with Java". Currently it exists in two forms, a stand-alone application and a web-based a...2616 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offering the possibility to manually control the scaffoldi...
2551 days ago
DendroPy: a Python library for phylogenetic computing
...ersion and tree posterior distribution summarization, are also distributed and installed as part of the libary. DendroPy can thus function as a stand-alone library for phylogenetics, a...2198 days ago
Gblocks: eliminates poorly aligned positions and divergent regions of a DNA or protein alignment
...its use as simple as possible without loosing the functionality that it is necessary in most of the cases. Other options can be changed in the stand-alone program. You can see here an&...2158 days ago
JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
...e, just tools for formatting data files to be read directly over HTTP. Serve huge datasets from a single low-cost cloud instance. Can run as a stand-alone app on OSX and Windows using...2131 days ago
