Results for "structural and sequence variation"
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RATT is software to transfer annotation from a reference (annotated) genome to an un..., it can also transfer annotations between strains and even different species, like Plasm...ble to transfer any entries present on a reference sequence,...3004 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblies Find variatio...identify inconsistencies between the input genome and the evidence in the reads. It then...
3003 days ago
- ...of software tools, developed and used by the Vertebrate Genome...manipulation (mostly genomic sequences, alignments, variation etc.), as well as specialize...lyses. It also features three sequence alignment packages: Satsuma,...for less diverged sequences; and SLAP, a context-sensitive local ali...
3002 days ago
- HiCdat: a fast and easy-to-use Hi-C data analysis tool HiCdat is easy-to-use and provides solutions starting from aligned reads...y, HiCdat is focussed on the analysis of larger structur...es of chromosomes, their correlation to genomic and epige...
2999 days ago
- Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bio...
2981 days ago
- LAST can: Handle big sequence data, e.g: Compare two verteb...lity of each aligned column. Use sequence quality data properly. C...th frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities between random sequences. Do split and splic...
2973 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jeru...at at a given gene or locus, and then processes each graph independ...RNA-seq data into the unique sequences of transcripts, often genera...nchworm contigs into clusters and constructs complete de Bruijn grap...2959 days ago
PAired-eND Assembler for DNA sequences
PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. More at https://github.com/neufeld/pandaseq2945 days ago
- MIRA is a multi-pass DNA sequence data assembler/mapper for whole genome and EST/RNASeq projects. MIRA ass...encing into contiguous sequences (called contigs). One can use the sequences of different sequencing tech...It is the Swiss army knife of sequence assembly that I've used and devel...
2945 days ago
RACA: Reference-Assisted Chromosome Assembly
Rreference-Assisted Chromosome Assembly (RACA), an algorithm to reliably order and orient sequence scaffolds generated by NGS and assemblers into longer chromosomal fragments using comparative genome information and paire...2945 days ago
