BOL

Log in

Our Sponsors


Download BioinformaticsOnline(BOL) Apps in your chrome browser.


Results for "structural and sequence variation"

Wire posts

  • Jit

    Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630013/ #Bacteria #NGS #Comparative #Genomics

    2330 days ago

  • Jit

    get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa

    2299 days ago

  • Rahul Nayak

    Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

    2242 days ago

  • Manisha Mishra

    Extract fasta with Ids. $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #extract #fasta #sequence #ids

    2208 days ago

  • Manisha Mishra

    Remove the sequence by fasta ids. awk 'BEGIN{while((getline<"ids.txt")>0)l[">"$1]=1}/^>/{f=!l[$1]}f' seq.fa #Remove #Delete #ids #fasta

    2208 days ago

  • Jit

    Genome Assembly: #Scaffolding Guided by Related Genomes https://www.duo.uio.no/bitstream/handle/10852/37431/Furenes_Master.pdf?sequence=1

    2145 days ago

  • Neelam Jha

    Reverse complement of fasta sequence $ tr -d "\n " < chrII.fa | tr "[ATGCatgcNn]" "[TACGtacgNn]" | rev > chrII_reverseHai.fa #Reverse #Complement #DNA

    2041 days ago

  • Shruti Paniwala

    Variant calling https://www.ebi.ac.uk/training/online/course/human-genetic-variation-i-introduction/variant-identification-and-analysis/what-variant #variant #snp #tutorial

    2017 days ago

  • Rahul Nayak

    #Search a #genome sequence for secondary #metabolite biosynthetic gene clusters https://antismash.secondarymetabolites.org/#!/start

    1968 days ago

  • Jit

    Extract sequence by ids $ xargs samtools faidx Adineta_vaga.v2.pep.fa < AlienIds > allAlienSeq.fa #Extract #Ids #Sequences

    1963 days ago

Powered by Elgg