Software packages for next gen sequence analysis
...x/Alpha. * SOCS - Aligns SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp string searc...pileups; and easy visualization of putative single nucleotide and structural variation. From the Sanger Centre. * Ma...3254 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological func...nguish between residues that are conserved due to structural restraints from those due to...utilizes protein-structure prediction to provide structura...2213 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ta Golden Helix: SNP and Variation Suite used for managing, an...anage, curate, report genomic variation Has own data library -- data...ckground prevalence of exonic variation in the Phase 3 1000 Genomes d...analysis server that provides structural effects of a mutation; Uses...2920 days ago
2880 days ago
Genome Assembly Tools and Software - PART1 !!
...reads to the assembled sequence. Structure variation and mis-assembly can be detect...3’UTR Annotation IsoSCM (Isoform Structural Change Model) is a new method...laSV 1.0.2 – Local Assembly based Structural Variation Discovery tool laSV is a s...2697 days ago
Quick next generation sequencing (NGS) terms definition
...o be sampled from a normal distribution. Therefore, in the absence of structural variants, mapping locations o...cantly from this distribution, it signals for a potential copy number variation (CNV).2533 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two dif...within the Mammalia. diversity -- Term used to describe numbers of taxa, or variation in morphology. evoluti...2473 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed...on of protein-coding genes, as well as other functional genome units such as structura...2343 days ago
List of visualization tools for genome alignments
...d pileups and easy visualization of putative single nucleotide and structural variation http://lookseq.sourceforge.n...Visualization of short read alignment, identification of genetic variation and association with annotati...2295 days ago