Results for "structure analysis"
Bio-Scripts
Blast result parser with Perl and Bioperl
#!/usr/local/bin/perl # # Dr. Xiaodong Bai # It may be freely distributed under GN...ated and ready for import into a spreadsheet program for browsing and further analysis. # use strict; use warni...2907 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2518 days ago
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR ;...2292 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the ref...2133 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for d...alled.................................no. auto::coverage - Are coverage analysis tools installed...Negative re...1530 days ago
- ➜ BorisTrinityAssembly /home/urbe/Tools/transrate-1.0.3-linux-x86_64/transrate...mbly/transrateSTAT/Trinity/contigs.csv [ INFO] 2018-07-13 14:54:40 : Writing analysis results to assemblies.csv
2116 days ago
- jitendra@jitendra-UNLOCK-INSTALL[SNP] wget htt...ne metrics for the given BaseCalling analysis directory. ExtractIllu...-------------------------- Coverage Analysis:...Tools that perform metagenomic analysis, e.g. microbial community com...
2068 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ---------------------...ssibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...ssibly newer than the currently available SMRT(R) Analysis builds. While # # efforts ha...2027 days ago
- #http://www.nupack.org/downloads/source ➜ tools git:(master) ✗ cd nupack3....c pfuncUtils.c: In function ‘PrintStructure’: pfuncUtils.c:950:7: warnin...Wunused-result] scanf("%s", structure); ^~~~~~~~~~~~~~~~~~~...design_engine.c: In function ‘parseStructur...
2019 days ago
Setting up falconUnzip conda environments for genome assembly !
...$ conda deactivate ➜ Analysis_Results source activate denovo_asm (denovo_asm) ➜ Analysis_Results conda install pb-asse...e currently available SMRT(R) Analysis builds. While # # efforts ha...e currently available SMRT(R) Analysis builds. While # # efforts ha...1982 days ago
