Results for "structure analysis"
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Microbiome analysis using a single application MEGAN6...d in one application. Taxonomic analysis using the NCBI taxonomy or a...taxonomy such as SILVA Functional analysis using InterPro2GO, SEED, eggN...ns of sequencing reads. Blast-like analysis can be performed using DIAMON...2850 days ago
- Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using sequencing data. The methods are desig...
2807 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitabl...Applications: De Novo Assembly Transcriptome analysis Base Modification Analysis...
2636 days ago
- KisSplice is a software that enables to analyse RNA-seq dat...possible post-treatments meant to facilitate the analysis of the results. The choice of...riptome and on the need to perform a differential analysis, as summarised in the followi...
2828 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1235 days ago
- Recent technological progress has greatly facilitated de novo genome sequenci...rming and improving the quality of such assemblies is critical for subsequent analysis. Visualization and qua...
2820 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic ide...count by 500 genes (10% of previously annotated genes) and refining the gene structur...2743 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-s...consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structur...
2804 days ago
- The Sybil software package provides a primarily web-based front-end to comparative geno...Park to support a number of research projects that involve comparative genome analysis. The following sections provi...
2806 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall sh...implementation MIRO is especially adapted for the analysis of reads generated with the I...
2779 days ago
