funannotate: Eukaryotic Genome Annotation Pipeline
Funannotate is a genome prediction, annotation, and comparison software package. It was originally written to annotate fungal genomes (small eukaryotes ~ 30 Mb genomes), but has evol...2068 days ago
GenomeThreader: Gene Prediction Software
...sp;is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a simil...in sequences are used to predict gene structures via spliced alignments. ...ons in GeneSeqer, a popular gene prediction program which is widely used...2054 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
The software package SiLiX implements an ultra-efficient algorithm for the clustering of homologous sequences,...a network. A very efficient algorithm, based on the Disjoint Sets Data Structure,...1984 days ago
EGAD: Ultra-fast functional analysis of gene networks
With the EGAD (Extending ‘Guilt-by-Association’ by Degree) package, we pre...ontrolled comparisons and analyses. Two of the core features are: a function prediction algorithm which is fully vect...1982 days ago
Biotite: A general framework for computational biology
The package is open source and freely available at GitHub (https://github.c...sts of four sub packages: sequence, structure, databases, and application. The sequence and structure modules serve for the an...ocuses on working with sequence and structure...1979 days ago
GeneOverlap: An R package to test and visualize gene overlaps
Overlapping gene lists can reveal biological meanings and may lead to novel hypotheses. For example, histone modific...lular mechanism that can pack and re-pack chromatin. By making the chromatin structure...1968 days ago
1954 days ago
molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
...gh quality molecule depiction, molecular database tools supporting substructure and similarity searches. Our products support also fragment-based virtual screening, bioactivity prediction and data visualization. Molin...1945 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multipl...n-functional sequences (pseudogenes) without disrupting the underlying codon structure....1916 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by the genetic clustering program structure or by other similar prog...icients in the same form as used in "Genetic structure...1881 days ago