2688 days ago
2541 days ago
Synteny Portal: a web-based application portal for synteny block analysis
Synteny Portal, a versatile web-based appl...tructing, visualizing and browsing synteny blocks. With Synteny Portal, users can easily (i)...high-quality images, (iii) browse synteny blocks with genetic informati...ing limitations of existing tools. Synteny Portal is freely available at...2535 days ago
MGRA: Breakpoint graphs and ancestral genome reconstructions
...tion of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such seq...2473 days ago
2467 days ago
orthodotter: Synteny plots (oxford grid)
orthodotter -h -------------------------------------------------------------------------------- orthodotter - Plot orthologous genes on an oxford grid. -f <...2458 days ago
2335 days ago
kraken: A universal genomic coordinate translator for comparative genomics
If you planning on conducting a study involving dozens of large genomes, then you do not have to run all pairwise synteny alignments .. simply try kraken: A universal genomic coordinate translator for comparative genomics2338 days ago
xmatchview: smith-waterman alignment visualization
xmatchview and xmatchview-conifer are imaging tools for comparing the synteny between DNA sequences. It allows users to align 2 DNA sequences in fasta format using cross_match and dis...2317 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
..., we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), and synteny). One is comparing human GENC...846 days ago