Results for "table"
Bio-Scripts
P2880 days ago
- #USAGE: CI_normal(matrix[,c(x:y)],97.5) - multiple column from a normal distribution #USAGE: CI_tdist(matrix[,c(x:y)],97.5) - multiple column from a t distribution #...
2880 days ago
Reformat the file names with Perl
...use strict; use warnings; use File::Copy qw(copy);; $| = 1; my %hash; my @files = glob "*.scf"; if (!$ARGV[0]){ print "Table file needed\n USAGE: $0 table\n"; exit;} my $ifh = read_...2344 days ago
Plot the density of genes in R
#column1 = chromosome name and column2 = start position of the gene # check if ggplot2 is installed, if so, load it, # if not, install and load it if("ggplot2" %...2293 days ago
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2273 days ago
Plot custom gene density with R
library(karyoploteR) pp2258 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_rea...2254 days ago
Perl script to find coding regions in DNA sequences
...the filenames my $filecodontable = $ARGV[0]; my $filesequence...loglkh.pl: the file $filecodontable can not be opened\n"; exit...\d+)/); # load the hash table $pcodons{$codon}=$freq; }...probability computed from the table of codon frequencies divided...2163 days ago
- ...sion derived from in filename(s) and deflines (only for single table dump) --table Table name withi...
2135 days ago
- ...ounter Generates table of filtered base counts at he...ompare base quality score recalibration (BQSR) tables BamIndexStats (Picard)...Generates recalibration table for Base Quality Score Recali...
2084 days ago
