Results for "target"
Bio-Scripts
Create genome scaffolding with Perl
...id >= $projOpts->{"pid"}) && $querySeqs{$qName} && $targetSeqs{$tName}){ my %meta = (); my $shortTarget = ($tSize < $qSize) ? 1 : 0;...; my %displayed = (); foreach my $seqID (sort(keys(%targetSeqs))){ my $fullName = $ta...2316 days ago
- ...t system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linu...t system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linu...t system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linu...
2159 days ago
Biological Sequence handling with Perl !
...)); } sub align { my $self = shift; my $seq = shift; $seq = $seq->seq if ref($seq); return new Sequence::Alignment(src=>$seq,target=>$self->seq); } sub _canoni...2189 days ago
Perl script to run SATSUMA in loop !
...reference multifasta file name here my $seqfile=""; my $queryfile = "genome.fasta"; # Ur query genome my $tarfile = "renamedAdinetaV2.fa"; #Ur target file my $satsumaLoc="/home/u...2148 days ago
- ...Sniffles-1.0.5/build Scanning dependencies of target zlibstatic [ 1%] Building C...Linking C static library libz.a [ 16%] Built target zlibstatic Scanning dependen...CXX static library libbamtools.a [ 56%] Built target BamTools-static Scanning dep...
2106 days ago
- ...s --spark-runner controls how spark tools are run valid targets are: LOCAL: run u...ect metrics to quantify single-base sequencing artifacts. CollectTargetedPcrMetrics (Picard)...
2083 days ago
Installing Platypus on Ubuntu !
.../usr/local/share/man/man5’: Permission denied Makefile:447: recipe for target 'installdirs' failed make: *....c:3858:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]...2027 days ago
- ...let layout_data2 = [ { source: { id: 'january', start: 1, end: 12 }, target: { id: 'april', start: 18, end: 20 }}, { source: { id: 'february', start: 20, end: 28}, target: { id: 'december', start: 1,...
1532 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...) ➜ build git:(master) ✗ make -j 4 Scanning dependencies of target bmp Scanning dependencies of target alignment [ 3%] Building CX...s.cpp.o [ 95%] Linking CXX executable i-adhore [ 95%] Built target i-adhore [ 96%] Building CXX...1211 days ago
Identify genome-wide synteny with LASTZ alignment
...chain.filter.tnet.synnet.axt AAChr1.txt.sizes FFChr1.txt.sizes -tPrefix=target. -qPrefix=query. chr1.chain.f...markers perl Maf2rawsynteny.pl chr1.chain.filter.tnet.synnet.axt.maf target.AAChr1 query.FFChr1 perl Ge...525 days ago
