Results for "targeted sequencing"
Bio-Scripts
...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g. adap...late PCR-related metrics from targeted sequencing data. CollectV...ed allele fractions in pooled sequencing CalculateGenotypePosteri...2074 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ format)...is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1558 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # Th...1541 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@j...is a method for detecting structural variants in sequencing data using genome-wide local...nsfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularl...1510 days ago
- Use pen and paper the assemble it. If you are brave enough, you can try to assemble...AGCCGGACCT TATGATCATT TCATTAGGCG AGGCGGAGCT HINT: There is NO sequencing errors HINT: Overlaps are...
1214 days ago
Install Varscan on Ubuntu / Linux !
#Varscan is a java program designed to call variants in sequencing data. It was developed at the Genome Institute at Washington University and is hosted on github. To use Varscan we simply need to d...822 days ago
