CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or O...2927 days ago
2927 days ago
2927 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish bu...tification of structural variation in a genome re-sequencing experiment. Hagfish requires...2919 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-sourc...mapping second and third-generation sequencing reads to a reference genome....gn reads generated by all the major sequencing technologies, including Illum...appings for all the generated data (sequencing technologies, low-coverage an...2919 days ago
2919 days ago
2906 days ago
2896 days ago
2179 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome size, then s...2179 days ago