2873 days ago
2717 days ago
ARC: pipeline which facilitates iterative, reference guided de novo assemblies
...objective, but rather when the researcher wishes to assemble discreet 'targets' contained within next-genera...ovo assemble specific content and a set of semi-similar reference targets is available to initialize th...2114 days ago
Bokeh: An interactive visualization library that targets modern web browsers for presentation
Bokeh is an interactive visualization library that targets modern web browsers for presentation. Its goal is to provide elegant, concise construction of versatile graphics, and to ext...2099 days ago
kallisto: a program for quantifying abundances of transcripts from bulk and single-cell RNA-Seq data
...h-throughput sequencing reads. It is based on the novel idea of pseudoalignment for rapidly determining the compatibility of reads with targets, without the need for alignme...1949 days ago
GRAbB: Selective Assembly of Genomic Regions, a New Niche for Genomic Research
GRAbB is shown to be more efficient than MITObim in terms of speed, memory and disk usage. The other functionalities (handling multiple targets simultaneously and extracting homologou...1930 days ago
CRBHits: From Conditional Reciprocal Best Hits to Codon Alignments and Ka/Ks in R
...crb-blast and covers all necessary steps from sequence similarity searches, codon alignments to Ka/Ks calculations and synteny. The new R package targets ecology, population and evolu...1275 days ago
MAGIC: A tool for predicting transcription factors and cofactors driving gene sets using ENCODE data
...ent of TFs and cofactors in gene bodies and flanking regions in gene lists without an a priori binary classification of genes as targets or non-targets. When compared to other TF mi...1260 days ago