Results for "taxdump"
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...biogeek@biogeek LEGE@lege sahabuddin@sahabuddin Latest blog posts Jit@jit.aber Explore taxdump files !By Jit 37 days ago extracttaxdumpreadmetaxonomyncbi Thi...1522 days ago
Parse the NCBI taxonomy database with Perl !
...database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile', -directory=> "taxdump", -nodesfile=> "taxdump/nodes.dmp",...1183 days ago
Perl script to get all the descendent in a tree !
...database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile', -directory=> "taxdump", -nodesfile=> "taxdump/nodes.dmp",...1175 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...hird party database for Alienomics\n"; #Install NCBI taxdump my $url = 'ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz'; my $file = 'taxdump...__END__ # BlastDB download my $result = `mkdir taxdump; cd taxdump; wget ftp://ftp.n...1171 days ago
- #use strict; use warnings; use ExtUtils::Installed; use LWP::Simple; use Archive::Extract; # # First, check if all the required modules have been installed in the...
1169 days ago
