Results for "taxonomic"
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...uence data ("contigs") derived from (often unintentionally) mixed-species pools. It allows the simultaneous display of GC content, coverage, and taxonomic annotation for collections of...2881 days ago
Kraken: ultrafast metagenomic sequence classification using exact alignments
Kraken is an ultrafast and highly accurate program for assigning taxonomic labels to metagenomic DNA sequences. Previous programs designed for this task have been relatively slow and c...2868 days ago
- Kaiju is a program for the taxonomic classification of metagenomic high-throughput...r querying any other protein database without taxonomic classification, using either...n Menzel, P. et al. (2016) Fast and sensitive taxonomic classification for metagenomi...
2868 days ago
- ...cation MEGAN6 is a comprehensive toolbox for interactively analyzing microbiome data. All the interactive tools you need in one application. Taxonomic analysis using the NCBI taxon...
2840 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1225 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotate the plots with taxonomic information. Different sets of annotations, including taxonomic assignments from conserved ma...2596 days ago
Metagenomics assembly workshop !!
...Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binning MaxBin Binning MetaBAT Binning Classification Kraken Taxonomic Sequence Classification Syste...2573 days ago
RITA: Rapid identification of high-confidence taxonomic assignments for metagenomic data
RITA is a standalone software package and Web server for taxonomic assignment of metagenomic sequence reads....ation: MacDonald NJ, Parks DH, and Beiko RG. Rapid identification of taxonomic assignments. Accepted to ...2350 days ago
phyloXML: XML for evolutionary biology and comparative genomics
...nguage designed to describe phylogenetic trees (or networks) and associated data. PhyloXML provides elements for commonly used features, such as taxonomic information, gene names and i...2348 days ago
REGEN: Ancestral Genome Reconstruction for Bacteria
...REGEN was designed to be used with any set of genomes that are sufficiently related, which will usually be the case for bacteria within the same taxonomic order.2251 days ago
