Results for "tools"
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Finding Patterns in Biological Sequences
...and proteins). We also provide biological motivation, and methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern dis...2684 days ago
- ...etions (GLAM2). In addition to motif discovery, the MEME Suite provides tools for scanning sequences for ma...e datasets (MEME-ChIP). The MEME Suite is comprised of a collection of tools that work together, as shown...
2683 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. More at http://gkno.me/
2658 days ago
- ...ke It is also convenient to add the location of progressiveCactus/bin to your PATH environment variable. In order to run the included tools (ex hal2maf) in the submodule...
2658 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
...ased on whole-genome alignments to elucidate structural differences arising from insertions, deletions or from rearrangement events. Computational tools that can visualize genome ali...2657 days ago
- ...ite of core-genome alignment and visualization tools for quickly analyzing thousan...bination detection, and phylogenetic trees. Tools Parsnp - Core-genome...tion of alignments, trees and variants HarvestTools - Archiving and postproc...
2644 days ago
fineSTRUCTURE v2 & GLOBETROTTER
...s unavailable. GLOBETROTTER, the admixture dating method based on ChromoPainter. Download from the Downloads page. AdmixturePainting, A set of R tools to inmterpret the results of...2631 days ago
- Collectively, the bedtools utilities are a swiss-army knife of tools for a wide-range of genomics analysis tasks. The most widely-used tools enable genome arithmetic...n be conducted by combining multiple bedtools operations on the UNIX comman...
2620 days ago
FinisherSC: a repeat-aware and scalable tool for upgrading de novo assembly using long reads
FinisherSC, a repeat-aware and scalable tool for upgrading de novo assembly using long reads. Experiments with real data suggest that FinisherSC can provide longer and higher quality contigs than existing tools while maintaining high concordance.2617 days ago
splitbam: splits a BAM by chromosomes
...pty BAM files if no sam record was found for a chromosome. A pair of 'mock' SAM-Records can also be added to those empty BAMs to avoid some tools (like samtools) to crash. Usage java -jar...2616 days ago
