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e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...at an incredibly low cost compared to Sanger sequencing. Despite this, some old problems have become even more difficult, de novo assembly being on top of this list. Despite efforts...2693 days ago
FSA: Fast Statistical Alignment
...duced by FSA, where each character is colored according to the probability that it is correctly aligned (see the picture and movie at the top of the page). You can see...2644 days ago
- ...Add track annotations --reference, -f Either hg19, or hg38 --topdown, r Flag, when set, flips the orientation (P arms drawn on top)....
2637 days ago
Musket: a multistage k-mer spectrum based corrector
...performance evaluation results, in terms of correction quality and de novo genome assembly measures, reveal that Musket is consistently one of the top performing substitution-error...2341 days ago
Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads
...ers reads using a spaced seed method. Then, Rainbow implements a heterozygote calling like strategy to divide potential groups into haplotypes in a top–down manner. And along...2024 days ago
DISTRUCT: a program for the graphical display of population structure
...lations" Science 298: 2381-2385 (2002). Various options enable the user to control left-to-right printing order of populations, bottom-to-top printing order of clusers, co...1867 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...the popular benchmarks: BAliBASE, PREFAB, SABmark and OXBENCH, MSAProbs achieves statistically significant accuracy improvements over the existing top performing aligners, includin...1760 days ago
- Dash is a web application framework that provides pure Python abstraction around HTML, CSS, and JavaScript. Dash Bio is a suite of bioinformatics components that mak...
1642 days ago
BioJupies: Automatically Generates RNA-seq Data Analysis Notebooks
...eractive report from your own raw or processed RNA-seq data through a simple user interface BioJupies now supports user accounts! Sign in from the top right corner of the page for...1231 days ago
Google Colab : Google Colab is a free cloud service and now it supports free GPU!
...PyTorch, and OpenCV. If you have just a single notebook to submit, use the website https://google-colab.com/, it is really easy, on the top right corner click 'submit +'...1555 days ago
