Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to...2071 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
...l generate a new fasta file containing both the corrected contigs and the correct, unaffected contigs. https://nxrepair.readthedocs.io/en/latest/tutorial.html nxrepai...2066 days ago
Bioinformatics web development course
...Linux web server and to develop and deploy web applications for Bioinformatics. No previous programming knowledge is assumed. By following this tutorial you will learn the fundamenta...1780 days ago
Seq: A high-performance, Pythonic language for bioinformatics
...e as easy as writing Python code, and achieves performance comparable to (and in many cases better than) C/C++. Learn more by following the tutorial or from the cookboo...1763 days ago
Machine learning training and courses in bioinformatics !
...bayes, neural networks and SVMs will only be covered briefly. More at http://homes.sice.indiana.edu/yye/lab/teaching/spring2017-I529/ More tutorial at http://calla.rnet.m...1725 days ago
Understanding your reads and mapping !
One of the best tutorial for beginners ... https://bioinformatics-core-shared-training.github.io/cruk-summer-school-2017/Day1/Session4-seqIntro.html1697 days ago
shinyCircos: an R/Shiny application for interactive creation of Circos plot
...provide online use to the community. Furthermore, various types of Circos plots could be easily generated and decorated with simple mouse-click. Tutorial http://shinycircos.ncpgr...1688 days ago
DADA2: Fast and accurate sample inference from amplicon data with single-nucleotide resolution
The DADA2 tutorial goes through a typical workflow for paired end Illumina Miseq data: raw amplicon sequencing data is processed into the table of exact amplicon...1410 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. For ins...1364 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the sequencing noise (abundant in all NGS platforms) and true...1182 days ago