Comment on "Coronavirus Resources !"
...oV-2 Interagency Group (SIG) developed a Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of Interest Var...on https://www.cdc.gov/coronavirus/2019-ncov/variants/variant-info.html975 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the...tion of FreeBayes to generate frequency-based variant calls as well as some other o...1058 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-...eneral probabilistic framework for structural variant discovery. [ paper-2014 ] manta – Structural variant and indel caller for mapped s...1156 days ago
Comment on "URMAP, an ultra-fast read mapper"
...number of processor threads to use for mapping. Default is the number of CPU cores or 10, whichever is smaller. The -veryfast option specifies a variant mapping algorithm which is ~3...1297 days ago
1534 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...iple technologies to generate variant calls and regions for use in benchmarking and validating variant calling pipelines. Currently,...rk large indel and structural variant calls, as well as calls in di...r benchmarking germline small variantsPosters and Presentations by...1574 days ago
2151 days ago
Comment on "Structural variation: the hidden genomic treasure"
Structural variant detection and association testing https://github.com/zeeev/wham2641 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms https://peerj.com/articles/431/3562 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/early/2013/01/21/bib.bbs086.full3825 days ago