2500 days ago
Mesquite: A modular system for evolutionary analysis
Mesquite is modular, extendible software for evolutionary...a about organisms. Its emphasis is on phylogenetic analysis, but some of its modules conc...ics, while others do non-phylogenetic multivariate analysis. Because it is modular, the a...2496 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approach...ential and limitations of computational and experimental approaches to genome analysis.2477 days ago
Taxoblast : Taxoblast is a pipeline to identify contamination in genomic sequence
Modern genome sequencing strategies are high...n DNA sequences an important part of analysis pipelines. Here we use Taxobl...sequences. This or similar types of analysis, in combination with manual c...mic data to public repositories. Our analysis pipeline is open-source and f...2368 days ago
poRe: an R package for the visualization and analysis of nanopore sequencing data
Motivation: The Oxford Nanopore MinION device represents a unique sequencing technology. As a mobile sequencing device powered by the USB port of a laptop, the MinI...2368 days ago
DRAWID: user-friendly Java software for chromosome measurements and idiogram drawing
"DRAWID has number of advantages including a user-friendly interactive interface, pos...s well as number of useful functions facilitating the procedure of chromosome analysis," explain the scientists. "T...2364 days ago
Computational Genomics: Applied Comparative Genomics
...licable across the tree of life. The topics will include genome assembly & comparative genomics, variant identification & analysis, gene expression & regulation, personal genome analysis, and cancer genomics. The gra...2362 days ago
Scripts for the analysis of HGT in genome sequence data.
Scripts for the analysis of HGT in genome sequence data2361 days ago
ACANA: An accurate and consistent alignment tool for DNA sequences
ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specif...accurate alignment tool, ACANA is particularly useful in comparative sequence analysis for identifying conserved fun...2355 days ago
Harvest: a suite of core-genome alignment and visualization tools
...of intraspecific microbial genomes, including variant calls, recombination detectio...ls Parsnp - Core-genome alignment and analysis Gingr - Interactive visualization of alignments, trees and variants HarvestTools - Archivin...2353 days ago