Results for "variant analysis"
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Ultrafast and accurate nucleotide-resolution analysis of structural variants More at http://bioinform.github.io/breakseq2/ Download BreakSeq2 Latest version: https://github.com/bioinform/break...2986 days ago
- DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assembler, both desig...at was not previously possible. DISCOVAR can call variants on a region by region basis,...otentially tiling an entire large genome. DISCOVAR variant...
2938 days ago
- Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systema...a, ALE recovers 215 of 222 (97%) single nucleotide variants in a training set from a GC-...e genome, surpassing even Pacific Biosciences' own variant...
2930 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of...diving head first into more advanced analysis tools such as HOMER. Setti...ranscript discovery and differential analysis with Cufflinks Differential...y or RNA-Seq) Microarray Basic analysis of Affymetrix Gene Expression...2930 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on m...2928 days ago
- AccNET is a Perl application that presents a new way to st...a bipartite network compatible with common network analysis platforms. AccNET collects ph...functional information in a network improving the analysis capability. Networks offer a...
2766 days ago
Hagfish - assess an assembly through creative use of coverage plots
Hagfish is a tool that is to be used in data analysis of Next Generation Sequencing (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others) in q...2905 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a...nsertions and deletions. To support the growing interest in larger structural variant...2905 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2905 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2903 days ago
