Results for "variant analysis"
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Microbiome analysis using a single application MEGAN6...d in one application. Taxonomic analysis using the NCBI taxonomy or a...taxonomy such as SILVA Functional analysis using InterPro2GO, SEED, eggN...ns of sequencing reads. Blast-like analysis can be performed using DIAMON...2840 days ago
- ...ing more about PacBio data and bioinformatics analysis, and includes content suitab...lications: De Novo Assembly Transcriptome analysis Base Modification Analysis Barcoding Data Analysis Tools Minor Variants and Phasing Analysis...
2626 days ago
- ...biological conditions, and will quantify each variant in each condition. It has bee...sible post-treatments meant to facilitate the analysis of the results. The choice of...ome and on the need to perform a differential analysis, as summarised in the followi...
2818 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1225 days ago
- Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an increasingly popular format for this data. The format of these...
2815 days ago
- Recent technological progress has greatly facilitated de novo genome sequen...rming and improving the quality of such assemblies is critical for subsequent analysis. Visualization and qua...
2810 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework for Structural Variant...
2809 days ago
- The Sybil software package provides a primarily web-based front-end to comparative ge...Park to support a number of research projects that involve comparative genome analysis. The following sections provi...
2796 days ago
- The accurate description and annotation of structural variants can be complex. This is du...to the different resolution that variants are reported from traditiona...s which make up a structural variant. A breakpoint is defined as a...ves a detailed description of the variant...
2772 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall sh...implementation MIRO is especially adapted for the analysis of reads generated with the I...
2769 days ago
