Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to...me one leading method in -omics data analysis and visualization. Followi...ww.biotapestry.org/ Caleydo Visual analysis framework targeted at biomole...PathVisio Biological pathway analysis software that allows drawing,...2288 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological...nd quantitation of their volumes. PocketPicker Grid-based technique for the analysis of protein pockets. PocketPic...2203 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ctly from NCBI Ingenuity Variant Analysis (QIAGEN) allows for varia...ichment, Fusion detection and Variant calling Allows users to create, save, share, or download analysis pipelines for automated and r...ogram; SNV caller for somatic variants in “low cellularity can...2910 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation &n...of using GeneSCF over other enrichment tools is that, it performs enrichment analysis in real-time (v1.1 and above)...2873 days ago
2870 days ago
Genome Assembly Tools and Software - PART1 !!
...embly accuracy for downstream analysis. It combines the information...form automated comparison and analysis of any generated assemblies...rsible model with gamma and invariant rate heterogeneity and a novel...Genome Assembly and Variation Analysis Cortex is an efficient and...2687 days ago
Awesome perl frameworks, libraries and software - PART 1
...f - Convert a VCF into a MAF, where each variant is annotated to only one of a...ies for Next-Generation Sequencing (NGS) data analysis masukomi/jsonpath-perl ...Perl Framework for High Throughput Sequencing analysis gbarr/perl-libnet - per...2490 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in...diagram, resulting from a cladistic analysis, which depicts a hypothetical...methods. ingroup -- In a cladistic analysis, the set of taxa which are hy...es of characters used in a cladistic analysis, either original or derived....2463 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...) http://www.csbio.unc.edu/rs/ Variant calling ChimeRScope Fusion...tGT Genotyping of known SNV/SNP variants directly from raw NGS sequen...using SNPs (based on k-mer analysis) Software (C) https://sourc...xonomic assignment in metagenome analysis by exact k-mer search; L...2372 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in...e useful links: Single Cell RNAseq data analysis Tutorial A step-by-step workflow for low-level analysis of single-cell RNA-seq data...on and evaluation in single-cell RNA-seq analysis https://github.com/zji90/TSC...2352 days ago