Genome Assembly Tools and Software - PART1 !!
...o longer contigs, by iteratively calling Vmatch and Trinity, until som...3 – De novo Assembly based Variant Calling pipeline for Illumina Short R...nbsp;de novo assembly based variant calling pipeline for deep Ill...eversible model with gamma and invariant rate heterogeneity and a nove...2681 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a s...e HTML form handler mskcc/vcf2maf - Convert a VCF into a MAF, where each variant...2485 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...type of k-mers) Software (C++) http://www.csbio.unc.edu/rs/ Variant calling ChimeRScope Fusion transcri...om/ChimeRScope/ChimeRScope/wiki FastGT Genotyping of known SNV/SNP variants directly from raw NGS sequen...2367 days ago
My commonly used commands in Bioinformatics
FYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them ind...close this issue (or keep it open if you still want to implement some kind of variant...2106 days ago
List of non-commercial NGS genotype-calling software
...l Single-sample High-quality variant database (for example, dbSNP)...Software for SNP and genotype calling using single individuals and...ed Genotyper), SNP filtering (Variant Filtration) and SNP quality r...includes a mode for genotype calling IMPUTE2 http://mathgen.stats...2092 days ago