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Results for "velvet"

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• • BioStar@biostar

  

  shovill: Assemble bacterial isolate genomes from Illumina paired-end reads

  ...lters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other assemblers like SKESA, Velvet and Megahit, so you can take...

  1217 days ago

• • Jit@jit.aber

  

  VAGUE:Velvet Assembler Graphical Front End

  VAGUE is a vague acronym for "Velvet Assembler Graphical Front End", which means it is a GUI for the Velvet de novo assembler. The command line version of Velvet can be complicated for beginn...

  2625 days ago

• • Jit@jit.aber

  

  HGA

  ...titions. 2. Assembling each partitions using a pre-specified assembler (Velvet or SPAdes in this version) an...the partition. 4. Combining all the assemblies of the partition (using velvet with kmer value of 31). 5. Fi...

  2712 days ago

• • Jit@jit.aber

  

  Minia

  ...r in a day. The output of Minia is a set of contigs. Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet). Download Minia 2.0.7 Linu...

  2703 days ago

• • Poonam Mahapatra@poonam

  

  Standardized velvet assembly report

  Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pdflatex (usually par...nces (leave out the .fa) https://github.com/leipzig/standardized-velvet-assembly-report

  2702 days ago

• • Poonam Mahapatra@poonam

  

  Velvet tutorial

  ...vity is to help you understand how to run Velvet in general, how to accur...use of Bowtie, the primary parameters of velvet, and the process involved in...://evomics.org/learning/assembly-and-alignment/velvet/

  2702 days ago

• • Jit@jit.aber

  

  Metagenomics assembly workshop !!

  ...orial will guide you through the typical steps of metagenome assembly and binning. The Tutorial Data Set FastQC Quality Control Assembly Velvet Assembly MEGAHIT Assembly I...

  2572 days ago

• • Neelam Jha@neelam

  

  Consed--A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish, Autoreport, Autoedit, and Align Reads To Reference Sequence)

  ...pe can bring up consed to edit reads and the reference sequence in targeted regions. Consed is compatible with Newbler, Cross_match, Phrap, MIRA, Velvet and PCAP output. Quickly tak...

  1547 days ago

• • BioStar@biostar

  

  Genobuntu: Package for Next Generation Sequencing and Genome Assembly

  ...ing.Therefore, Genobuntu offers a well-tailored environment for both novices and experts working in the field of genome assembly. Features Velvet MiB SSAKE EULER VCAKE AB...

  1445 days ago