Perl script to find palindromic regions in DNA sequences
use strict; use warnings; my $pp = qr/(?: (\w) (?1) \g{-1} | \w? )/ix; my $filename = $ARGV[0]; open(my $fh, '2167 days ago
1554 days ago
1537 days ago
Pack a perl program with their dependencies on Ubuntu !
...n of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo...1524 days ago
1455 days ago
1228 days ago
1228 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...lding CXX object src/CMakeFiles/i-visualize.dir/SvgWriter.cpp.o [ 32%] Building...Two.cpp.o /home/urbe/Tools/i-adhore-3.0.01/src/SvgWriter.cpp: In member function...t/datasetI/arath_2_3_beta/AlignmentMultiplicon2.svg -- Installing: /home/urbe/an...1216 days ago
1067 days ago
Perl script to parse blast results and plot basic stats !
...-----------------------\n"; } # Calculate additional statistics my $avg_percent_identity = calculate_average(\@blast_entries, 'PERCENT_IDENTITY'); my $avg_alignment_length = calculate_...107 days ago