Results for "vi"
Top-level pages
...ce read to the reference genome. Three core abbreviations are used: M for alignme...umber of base pairs that are sequenced in an individual sequence read. read-dept...es options for converting, sorting, indexing and viewing SAM/BAM files. The SAMto...2882 days ago
Genome Assembly Tools and Software - PART1 !!
...ngth and other features of indvidual sequencing technologies....ntigs into scaffolds, also provide the average coverage (indic...ssembler designed to assemble virus genomes that have no repea...acency Graph Construction and Visualisation Contiguity is i...2698 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be e...endwhile Set the class average to the total divided by ten Print the class av...equal to zero set the average to the total divided by the counter print t...2672 days ago
Perl Special Vars Quick Reference
...aths. %INC Keys are filenames, values are paths to modules included via use, require, or do. %ENV Hash containing current environment variables %SIG S...2657 days ago
Quick next generation sequencing (NGS) terms definition
...t the number of reads that “cover” each base-pair to follow a Poisson distribution. Therefore, if the read depth over a certain region deviates significantly from this d...2535 days ago
Awesome perl frameworks, libraries and software - PART 1
...onilaukkarinen/weed - Heavily Xchat inspired beautiful irssi theme. trizen/youtube-viewer - A lightweight appl...reactive Perl programs. It provides base classes for reactive...olFreak - a process supervisor in Perl typester/object-c...2502 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...chromosomes in which gene order is conserved. systematics -- Field of biology that deals with the diversity of life. Systematics is usually divided into the two areas of phyl...2475 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...m unassembled raw sequence data from whole genome sequencing projects; provides bootstrap support to asses...ion-based approach and non-negative least squares for prediction) Web service Software (Python) http://e...2384 days ago
Single Cell RNAseq data analysis tutorial !!
...early development studies, complex tissues (brain) Does not provide insights into the stochasti...aluation in single-cell RNA-seq analysis https://github.com/zji90/TSCAN Visualization and cellular hiera...2363 days ago
- ...lications, but no single analysis pipeline can be used in all cases. We review all of the major steps in R...ty control, read alignment, quantification of gene and transcript levels, visualization, differential gene...
2363 days ago
