We are interested in the study of complex systems in living organisms. Novel views augmenting the classical gene by gene approaches are required to overcome the engineered redundancies and com...
In a lot of my work in bioinformatics, I have been using hidden Markov models (HMMs). As a postdoc with David Haussler at UCSC we developed the so-called profile HMMs (refs). Since...
...) scheme to study the flux of antibiotics through porins and efflux systems
Setup of protocol to integrate MD results in a ligand-based approach
Viral inhibitors
Interactions o...
...iological features in genome sequences. Bergman Lab work focuses on improving annotation of non-protein-c...ents (TEs) and noncoding RNA (ncRNA) genes. Current projects include improving the (i) annotation of TEs i...
...he lab exploit new DNA sequencing technologies (Shendure et al., Nature Reviews Genetics 2004; Shendure &a...are outlined briefly below, and a full list of publications is available via PubMed. http://www.ncbi.nlm....
...ncing:
Department of Biotechnology,
Institute of Himalyan Bioresources Technology
CSIR, Palampur(Himachal Pradesh), India.
Email: ravishihbt.res.in; ravish9gmail.com
More @ http://...
...iagnostic fingerprint database (PRINTS), one of the founding partner of InterPro. We also design software to display sequence and structural data in visually-striking ways (e.g., Am...
...putation and Experiments
Identification of Biological Networks and Pathways
Evaluation and Validation of Computational Predictions
Scalable Visualization-Based Data Analysi...
...ield, museum and genomics approaches to understand the basis of avian diversity, evolution and behavior. Our guiding approaches inc...s that the focal species of any study has relatives that are behaviorally and ecologically no les...
...mentation, evaluation and application of bioinformatics approaches for the analysis of genome, transcriptome, proteome and metabolism.
Our main activities include
Analysis of re...