Results for "vi"
Bio-Scripts
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name he...2153 days ago
Perl script to convert GFF 2 FASTA !
#!/usr/bin/perl use strict; use warnings; use Bio::Seq; use Bio::SeqIO; use Bio::DB::Fasta; $| = 1; # Flush output my $outfile_cds = Bio::SeqIO->new( -for...2152 days ago
Long reads mapper bash script !
...a bash scrip to map your long reads and make it visualization ready !" #Loca...-lt 5 ]; then echo "No or less arguments provided" echo "#USAGE: runMap...ameter !" fi echo "Getting files ready for visualization !" $samtools view...2136 days ago
- ...ead Normalization --------------------- -- (Removing Excess Reads Beyond 50 Cove...fq right.norm.fq CMD finished (0 seconds) -removing tmp dir /home/urbe/Tools/tr...inity-v2.6.6/trinity_out_dir/both.fa | samtools view -@ 40 -F4 -Sb - | samtools...
2140 days ago
- ...split into individual reads --split-spot...Split spots into individual reads Full Spot Filte...same reference Filters for individual reads Applied only...Control program execution environment...
2139 days ago
- ...tig metrics done in 13 seconds [ INFO] 2018-07-13 14:54:34 : No reads provided, skipping read diagnostics [ INFO] 2018-07-13 14:54:34 : No reference provided, skipping comparative diag...
2136 days ago
- ...h et al, 2016 study rule download_all: input: expand("rnaseq/raw_data/{sample}.fq.gz", sample=SAMPLES) # rule to download each individual file specified in sample_...
1529 days ago
Installing Porechop on Ubuntu !
...a 0), reused 0 (delta 0), pack-reused 1579 Receiving objects: 100% (1579/1579), 3.38 MiB | 1.62 MiB/s, done. Resolving deltas: 100% (869/869), don...p/__init__.py -> build/lib/porechop Cleaning previous compilation: make clean r...2119 days ago
- ...iB | 21.72 MiB/s, done. Resolving deltas: 100% (223/223), don...Please add the following environmental variables to your ~/...s-static.dir/internal/io/BamDeviceFactory_p.cpp.o [ 38%] Buil...nter.cpp: In member function ‘virtual void VCFPrinter::print_b...
2112 days ago
Install Python locally on shared Linux server !
...will use the default python of #the system. We are going to update the environment variables to force the...~/.bashrc_profile #You might need to logout and login again for the environment to update properly. At...2111 days ago
