BioStar
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Raku script to find palindrome in genomes !
By BioStar 418 days ago
sub is-palindrome(Str $str) returns Bool {
$str.=uc; # convert to uppercase
$str.=subst:g/\s+//; # remove any spaces
return $str eq $str.flip;
}
sub find-palindromes(Str $dna, Int $min-length, Int $max-length) {
for $min-length..$max-length -> $length {
for 0..^$dna.chars - $length -> $pos {
my $substring = $dna.substr($pos, $length);
if is-palindrome($substring) {
say "Palindrome found at position $pos: $substring";
}
}
}
}
# Example usage
my $dna = "GGATCCATGGCCTAGG"; # example DNA sequence
find-palindromes($dna, 3, 8); # find palindromes with length between 3 and 8
