BOL

Perl courses https://www.gossland.com/perlcourse/default/index #Perl #Courses #Tutorial

This is the documentation of the #circlize package. http://zuguang.de/circlize_book/book/circular-layout.html #Circular #Visualization #R

All about #newbler #assembly https://contig.wordpress.com/ #NGS

Global access to #knowledge about life on Earth #Search the site http://eol.org/ #Encyclopedia #Life

NCBI genome download ftp://ftp.ncbi.nlm.nih.gov/pub/factsheets/HowTo_Downloading_Genomic_Data.pdf #Download #NCBI

Filter #blank #lines from a #fasta file using sed. $ sed '/^$/d' finalSample.fa > finalSample_filtered.fa #Linux #Filter #FASTA #SED

Researchers have succeeded in permanently rewriting flatworms' regenerative body shape by resetting their internal bioelectric pattern memory, causing even normal-appearing flatworms to harbor the "co

Plasmid finder https://cge.cbs.dtu.dk//services/PlasmidFinder/ #Plasmid #Find

#Genome #submission to #GenBank https://www.ncbi.nlm.nih.gov/genbank/genomesubmit/

Rename/number the multi-fasta file in ascending order. $ awk '/^>/{print ">" ++i; next}{print}' < Mix_assembly.fasta > Mix_assembly2.fasta #awk #oneliner

#Target 4 and #HSPS 1 with #blast $ blastn -task megablast -query brkSeq.fa -db myDBAvaga -evalue 1e-5 -num_threads 1 -max_target_seqs 4 -max_hsps 1 -outfmt '6' -out output

#Training http://ce3c.ciencias.ulisboa.pt/index.php

A full-featured & carefully designed adaptive prompt for Bash & Zsh https://github.com/nojhan/liquidprompt #Shell #Zsh #Bash

Quickly #Finding #Orthologs as Reciprocal Best #Hits with #BLAT, #LAST, and #UBLAST: How Much Do We Miss? http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0101850

Genome of interest Bacillus amyloliquefaciens https://www.ncbi.nlm.nih.gov/genome/genomes/848 #Bacteria