BOL

https://academic.oup.com/gbe/advance-article/doi/10.1093/gbe/evz072/5428150 #HGT #Bacteria #Symbiont

Beginner’s guide to comparative bacterial genome analysis using next-generation sequence data https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3630013/ #Bacteria #NGS #Comparative #Genomics

hybrid assembly pipeline for bacterial genomes with Unicycler: https://github.com/rrwick/Unicycler #Unicycler #Hybrid #Bacteria

Genome of interest Bacillus amyloliquefaciens https://www.ncbi.nlm.nih.gov/genome/genomes/848 #Bacteria

Decontamination https://img.jgi.doe.gov/er/doc/SingleCellDataDecontamination.pdf #Bacteria #Contamination

Meta-genomics assembly http://denbi-metagenomics-workshop.readthedocs.io/en/latest/index.html #Genomics #Meta #Assembly #Bacteria #Workshop #Tutorial

Ragout—a reference-assisted assembly tool for bacterial genomes http://bioinformatics.oxfordjournals.org/content/30/12/i302.short #Genome #Assembly #Reference #Ragout #Bacteria

Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS

Bacterial genome assembly tips using Valvet http://pathogenomics.bham.ac.uk/blog/2009/09/tips-for-de-novo-bacterial-genome-assembly/ #Assembly #NGS #Bacteria #Genome #Tricks #Tips #Velvet