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The Wire
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Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3377 days ago
BioStats with R
https:/
/
cran.r-project.org/
doc/
contrib/
Seefeld_StatsRBio.pdf
#R
#BioStats
#Example
Jit
@jit.aber
Thread
By
Jit
3378 days ago
PCA/clustering with R
http:/
/
www.mattpeeples.net/
kmeans.html
#R
#Cluster
#PCA
Jit
@jit.aber
Thread
By
Jit
3379 days ago
#Remove
all line that start with # file: $ sed '/^#/ d' filename
#line
#sed
#linux
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
3379 days ago
#Random
#sequence
generator with
#perloneliner
: $ perl -e '$x=int(rand(1000)); printf( "chr1\t%s\t%s", $x, $x + 10)'
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
3380 days ago
#Extract
a
#sequence
from
#multi
-fasta file: $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file
Jit
@jit.aber
Thread
By
Jit
3381 days ago
Install GIT in Ubuntu $ sudo apt-get install git-all
#git
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
3382 days ago
Try this on terminal;) $ while (true) do echo -n "BOL is awesome and amazing website "; done
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3383 days ago
Online free programming books
https:/
/
github.com/
vhf/
free-programming-books/
blob/
master/
free-programming-books.md
Shruti Paniwala
@shruti
Thread
By
Shruti Paniwala
3383 days ago
Essential perl
http:/
/
cslibrary.stanford.edu/
108/
EssentialPerl.html
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
3384 days ago
Selecting the Right
#Similarity
-Scoring
#Matrix
https:/
/
www.ncbi.nlm.nih.gov/
pmc/
articles/
PMC3848038/
Jit
@jit.aber
Thread
By
Jit
3384 days ago
Get the fasta sequence of the coordinates
http:/
/
bedtools.readthedocs.io/
en/
latest/
content/
tools/
getfasta.html
#Fasta
#Bed
#Coordinates
#Bedtools
Jit
@jit.aber
Thread
By
Jit
3385 days ago
Know your quota on cluster. $ quota -u user1
#quota
#cluster
#Server
Abhimanyu Singh
@abhimanyu
Thread
By
Abhimanyu Singh
3385 days ago
Assembly comparison
https:/
/
github.com/
WGLab/
uniline/
tree/
master/
src/
assembly_comparison
#NGS
#Assembly
#MUMMer
Jit
@jit.aber
Thread
By
Jit
3385 days ago
Map the
#density
on
#chromosome
with perl
https:/
/
bmcbioinformatics.biomedcentral.com/
articles/
10.1186/
s12859-016-1055-0
Jit
@jit.aber
Thread
By
Jit
3385 days ago
Add color to vim. Open vi .vimrc and at the end of the file add "syntax on"
#Vim
#Syntax
#Highlight
#Vi
#Linux
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