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The Wire
#Bed
Wire posts tagged with 'Bed'
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2176 days ago
Merge overlapping bed file
https:/
/
bedtools.readthedocs.io/
en/
latest/
content/
tools/
merge.html
#bed
#merge
#overlapping
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2176 days ago
make a window of 60k of bed file. $ bedtools makewindows -g genome -w 60000 > 60K.windows.bed
#bed
#bin
#window
Neel
@neelam
Thread
By
Neel
2260 days ago
BAM2BED conversion bamToBed -i overall_exp_genome_rep1.bam > alignment.bed
#Bed
#bam
#bamToBed
#convert
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2478 days ago
Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed
#Bed
#Extract
#Sequence
#bedtools
Jit
@jit.aber
Thread
By
Jit
2849 days ago
Get the fasta sequence of the coordinates
http:/
/
bedtools.readthedocs.io/
en/
latest/
content/
tools/
getfasta.html
#Fasta
#Bed
#Coordinates
#Bedtools